Publications

Performance Comparison of Next-Generation Sequencing Analysis Pipelines for HIV-1 Drug Resistance Testing.

Emma Lee and Neil Parkin, Cheryl Jennings, Chanson Brumme, Eric Enns, Maria Casadellà, Mark Howison, Mia Coetzer, Santiago Avila-Rios, Rupet Capina, Eric Marinier, Gary Van Domselaar, Marc Noguera-Julian, Don Kirkby, Jeff Knaggs, Richard Harrigan, Miguel Quinones-Mateu, Roger Paredes, Rami Kantor, Hezhao Ji. Scientific Reports. 2020.

Bioinformatic Data Processing Pipelines in Support of Next-Generation Sequencing-Based HIV Drug Resistance Testing: the Winnipeg Consensus.

Hezhao Ji and Eric Enns, Chanson Brumme, Neil Parkin, Mark Howison, Emma Lee, Rupert Capina, Eric Marinier, Santiago Avila-Rios, Paul Sandstrom, Gary Van Domselaar, Richard Harrigan, Roger Paredes, Rami Kantor, Marc Noguera-Julian. Journal of the International AIDS Society. 2018.

Impact of Sequencing Depth on the Characterization of the Microbiome and Resistome

Rahat Zaheer, Noelle Noyes, Rodrigo Polo Ortega, Shaun Cook, Tim Mcallister, Eric Marinier, Gary Van Domselaar, Keith Belk, Paul Morley. Scientific Reports. 2018.

Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations

Eric Marinier, Rahat Zaheer, Chrystal Landgraff, Kelly Weedmark, Michael Domaratzki, Philip Mabon, Natalie Knox, Aleisha Reimer, Morag Graham, Linda Chui, Laura Patterson-Fortin, Jian Zhang, Franco Pagotto, Jeff Farber, Jim Mahony, Karine Seyer, Sadjia Bekal, Cecile Tremblay, Judy Isaac-Renton, Gary Van Domselaar. Nucleic Acids Research. 2017.

Pollux: Platform Independent Error Correction of Single and Mixed genomes